6RZT
Structure of s-Mgm1 decorating the outer surface of tubulated lipid membranes
ELECTRON MICROSCOPY
Sample |
---|
Mgm1 |
Specimen Preparation | |
---|---|
Sample Aggregation State | PARTICLE |
Vitrification Instrument | FEI VITROBOT MARK IV |
Cryogen Name | ETHANE |
Sample Vitrification Details |
3D Reconstruction | |
---|---|
Reconstruction Method | SUBTOMOGRAM AVERAGING |
Number of Particles | 11474 |
Reported Resolution (Å) | 14.7 |
Resolution Method | FSC 0.143 CUT-OFF |
Other Details | Half sets were generated not even-odd but as upper and lower-halves of particles in given tomogram |
Refinement Type | |
Symmetry Type | POINT |
Point Symmetry | C1 |
Map-Model Fitting and Refinement | |||||
---|---|---|---|---|---|
Id | 1 | ||||
Refinement Space | |||||
Refinement Protocol | |||||
Refinement Target | |||||
Overall B Value | |||||
Fitting Procedure | |||||
Details |
Data Acquisition | |||||||||
---|---|---|---|---|---|---|---|---|---|
Detector Type | GATAN K2 SUMMIT (4k x 4k) | ||||||||
Electron Dose (electrons/Å**2) | 2 |
Imaging Experiment | 1 |
---|---|
Date of Experiment | |
Temperature (Kelvin) | |
Microscope Model | FEI TITAN KRIOS |
Minimum Defocus (nm) | 2000 |
Maximum Defocus (nm) | 4000 |
Minimum Tilt Angle (degrees) | |
Maximum Tilt Angle (degrees) | |
Nominal CS | 2.7 |
Imaging Mode | BRIGHT FIELD |
Specimen Holder Model | FEI TITAN KRIOS AUTOGRID HOLDER |
Nominal Magnification | 53000 |
Calibrated Magnification | |
Source | FIELD EMISSION GUN |
Acceleration Voltage (kV) | 300 |
Imaging Details |
EM Software | ||
---|---|---|
Task | Software Package | Version |
VOLUME SELECTION | Dynamo | 1.1.226 |
IMAGE ACQUISITION | SerialEM | 3.6 |
CTF CORRECTION | Gctf | 1.06 |
CTF CORRECTION | IMOD | 4.10 |
FINAL EULER ASSIGNMENT | Dynamo | 1.1.266 |
CLASSIFICATION | Dynamo | 1.3 |
RECONSTRUCTION | Dynamo | 1.1.226 |
Image Processing | ||||
---|---|---|---|---|
CTF Correction Type | CTF Correction Details | Number of Particles Selected | Particle Selection Details | |
PHASE FLIPPING ONLY | CTF determination was done by Gctf and correction was performed by ctfphaseflip from IMOD |