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Cryo-EM structure of a respiratory complex I mutant lacking NDUFS4
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 13.118 f_angle_d 1.222 f_chiral_restr 0.062 f_bond_d 0.013 f_plane_restr 0.008
Sample Mitochondrial NADH:ubiquinone oxidoreductase
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 145767 Reported Resolution (Å) 4.04 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 Refinement Space REAL Refinement Protocol OTHER Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K2 SUMMIT (4k x 4k) Electron Dose (electrons/Å**2) 60
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI POLARA 300 Minimum Defocus (nm) -2000 Maximum Defocus (nm) -3000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2 Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification 200000 Calibrated Magnification 45872 Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version IMAGE ACQUISITION Leginon 1.0 CTF CORRECTION Gctf MODEL FITTING Coot 0.8.8. MODEL REFINEMENT PHENIX 1.12_2829 INITIAL EULER ASSIGNMENT RELION 3.0 FINAL EULER ASSIGNMENT RELION 3.0 CLASSIFICATION RELION 3.0 RECONSTRUCTION RELION 3.0
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 418740