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ERK2 MAP kinase with the activation loop of p38alpha
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4S31
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 1.8 M ammonium sulfate, 0.1 M Bis-tris pH 6.8 or 6.5, 2% (w/v) PEG 550
Crystal Properties Matthews coefficient Solvent content 2.2 44.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.999 α = 90 b = 68.688 β = 109.13 c = 60.231 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 R CdTe 300K 2017-02-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.972 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 45.39 99.4 0.062 10 4 40460
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.73 0.716
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4S31 1.7 45.39 38401 2040 99.29 0.15969 0.1563 0.1684 0.21874 0.2269 RANDOM 36.37
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.1 -1.79 1.93 -0.64
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.089 r_dihedral_angle_4_deg 28.514 r_dihedral_angle_3_deg 19.311 r_long_range_B_refined 8.782 r_long_range_B_other 8.759 r_scangle_other 8.598 r_scbond_it 7.479 r_scbond_other 7.476 r_dihedral_angle_1_deg 7.272 r_mcangle_it 6.952
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.089 r_dihedral_angle_4_deg 28.514 r_dihedral_angle_3_deg 19.311 r_long_range_B_refined 8.782 r_long_range_B_other 8.759 r_scangle_other 8.598 r_scbond_it 7.479 r_scbond_other 7.476 r_dihedral_angle_1_deg 7.272 r_mcangle_it 6.952 r_mcangle_other 6.951 r_mcbond_other 5.904 r_mcbond_it 5.9 r_rigid_bond_restr 5.347 r_angle_refined_deg 1.894 r_angle_other_deg 1.465 r_chiral_restr 0.088 r_bond_refined_d 0.013 r_gen_planes_refined 0.009 r_bond_other_d 0.006 r_gen_planes_other 0.004 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2590 Nucleic Acid Atoms Solvent Atoms 173 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing