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Crystal structure of CLK3 in complex with T3-CLK
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2EU9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277.15 20% PEG3350, 10% ethylene glycol, 0.2M sodium nitrate
Crystal Properties Matthews coefficient Solvent content 3.13 60.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.788 α = 90 b = 123.329 β = 92.64 c = 69.589 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2017-09-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.91840 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.32 69.52 98.6 0.136 0.151 0.065 0.996 6.6 5.3 44358
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.32 2.45 98.7 0.763 0.847 0.362 0.693 2 5.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2eu9 2.32 69.52 42124 2206 98.46 0.2079 0.206 0.2075 0.2433 0.2429 RANDOM 57.63
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.42 -0.52 -0.97 -0.4
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.171 r_dihedral_angle_4_deg 18.664 r_dihedral_angle_3_deg 15.292 r_dihedral_angle_1_deg 6.533 r_angle_refined_deg 1.335 r_angle_other_deg 0.827 r_chiral_restr 0.084 r_bond_refined_d 0.014 r_gen_planes_refined 0.007 r_bond_other_d 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.171 r_dihedral_angle_4_deg 18.664 r_dihedral_angle_3_deg 15.292 r_dihedral_angle_1_deg 6.533 r_angle_refined_deg 1.335 r_angle_other_deg 0.827 r_chiral_restr 0.084 r_bond_refined_d 0.014 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5795 Nucleic Acid Atoms Solvent Atoms 225 Heterogen Atoms 112
Software Software Software Name Purpose Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction PHASER phasing