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TETR(D) E147A MUTANT IN COMPLEX WITH MINOCYCLINE AND MAGNESIUM
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6FPL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 295 precipitant: 0.5M (NH4)2SO4, 0.68M Li2SO4, 0.1M Na-citrate,
protein: 0.1mL protein, 0.1mL 2mM minoTc, 0.0005mL 3M MgCl2, 100 mM NaCl, 50 mM Tris pH 8.0,
ratio 2/2
Crystal Properties Matthews coefficient Solvent content 2.2 44.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.67 α = 90 b = 67.67 β = 90 c = 178.74 γ = 90
Symmetry Space Group I 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX-225 2011-12-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 0.95000 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 63.3 99.1 0.053 22.74 7.1 13397 43.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.05 2.17 99.5 1.09 2.46 7.15
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6FPL 2.05 47.9 12379 1028 99.24 0.21553 0.21134 0.2207 0.26329 0.27 RANDOM 53.247
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.27 1.27 -2.54
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.567 r_dihedral_angle_3_deg 17.187 r_dihedral_angle_4_deg 16.55 r_dihedral_angle_1_deg 7.337 r_long_range_B_refined 6.912 r_long_range_B_other 6.911 r_scangle_other 4.453 r_mcangle_it 4.414 r_mcangle_other 4.412 r_mcbond_it 2.872
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.567 r_dihedral_angle_3_deg 17.187 r_dihedral_angle_4_deg 16.55 r_dihedral_angle_1_deg 7.337 r_long_range_B_refined 6.912 r_long_range_B_other 6.911 r_scangle_other 4.453 r_mcangle_it 4.414 r_mcangle_other 4.412 r_mcbond_it 2.872 r_mcbond_other 2.872 r_scbond_it 2.87 r_scbond_other 2.869 r_angle_refined_deg 1.84 r_angle_other_deg 1.382 r_chiral_restr 0.088 r_bond_refined_d 0.013 r_gen_planes_refined 0.01 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1619 Nucleic Acid Atoms Solvent Atoms 61 Heterogen Atoms 40
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing