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Horse spleen apoferritin under 2 kBar of argon
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2W0O 2w0o.pdb
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 291 Ammonium sulfate 0.6 M + cadmium sulfate 0.1 M
Crystal Properties Matthews coefficient Solvent content 3.1 60.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 180.873 α = 90 b = 180.873 β = 90 c = 180.873 γ = 90
Symmetry Space Group F 4 3 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M bending mirrot 2018-09-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID30B 1.771 ESRF ID30B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 45.26 100 0.102 0.012 1 40.1 67.6 17689 30.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.11 99.7 0.679 0.086 0.978 8 61.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2w0o.pdb 2 45.26 16754 935 99.93 0.1736 0.17097 0.1713 0.22111 0.2197 RANDOM 32.46
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.296 r_dihedral_angle_4_deg 16.776 r_dihedral_angle_3_deg 14.567 r_long_range_B_refined 10.216 r_dihedral_angle_1_deg 6.003 r_scbond_it 5.03 r_mcangle_it 4.102 r_mcbond_it 2.908 r_angle_refined_deg 1.332 r_chiral_restr 0.086
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.296 r_dihedral_angle_4_deg 16.776 r_dihedral_angle_3_deg 14.567 r_long_range_B_refined 10.216 r_dihedral_angle_1_deg 6.003 r_scbond_it 5.03 r_mcangle_it 4.102 r_mcbond_it 2.908 r_angle_refined_deg 1.332 r_chiral_restr 0.086 r_gen_planes_refined 0.01 r_bond_refined_d 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1390 Nucleic Acid Atoms Solvent Atoms 215 Heterogen Atoms 23
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling FFT phasing