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Thermus thermophilus V/A-type ATPase/synthase, rotational state 1L
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5Y5Y experimental model PDB 5Y5X
Sample Thermus thermophilus V/A-type ATPase/ATP synthase
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 23027 Reported Resolution (Å) 3.8 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 (5Y5Y, 5Y5Y, 5Y5Y, 5Y5Y, 5Y5Y, 5Y5Y, 5Y5Y, 5Y5Y, 5Y5Y, 5Y5Y, 5Y5Y, 5Y5Y, 5Y5Y, 5Y5X, 5Y5X, 5Y5X, 5Y5X, 5Y5X, 5Y5X, 5Y5X, 5Y5X, 5Y5X, 5Y5X, 5Y5X, 5Y5X, 5Y5X) Refinement Space REAL Refinement Protocol Refinement Target Overall B Value 112.5 Fitting Procedure Details
Data Acquisition Detector Type FEI FALCON III (4k x 4k) Electron Dose (electrons/Å**2) 50
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 1000 Maximum Defocus (nm) 2000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 75000 Calibrated Magnification 129032 Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION RELION 3.0 beta IMAGE ACQUISITION EPU CTF CORRECTION CTFFIND 4.1.5 MODEL FITTING UCSF Chimera 1.13.1 INITIAL EULER ASSIGNMENT RELION 3.0 beta FINAL EULER ASSIGNMENT RELION 3.0 beta CLASSIFICATION RELION 3.0 beta RECONSTRUCTION RELION 3.0 beta MODEL REFINEMENT PHENIX 1.12
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 181245