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Structure of MBP-Mcl-1 in complex with compound 10d
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5LOF
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 284 25% PEG3350, 0.2M MAGNESIUM FORMATE, 1MM MALTOSE
Crystal Properties Matthews coefficient Solvent content 2.27 45.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.09 α = 90 b = 136.46 β = 90 c = 37.99 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2015-04-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 0.97857 SOLEIL PROXIMA 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.28 50 90.7 0.066 11.3 2.5 42423
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.28 2.42 88.5 0.68 1.4 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5LOF 2.5 20 17688 879 98.76 0.2023 0.1998 0.2042 0.2513 0.2562 RANDOM 42.156
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 -1.41 1.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.414 r_dihedral_angle_4_deg 23.349 r_dihedral_angle_3_deg 19.886 r_dihedral_angle_1_deg 4.811 r_angle_refined_deg 1.443 r_angle_other_deg 1.354 r_chiral_restr 0.07 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.414 r_dihedral_angle_4_deg 23.349 r_dihedral_angle_3_deg 19.886 r_dihedral_angle_1_deg 4.811 r_angle_refined_deg 1.443 r_angle_other_deg 1.354 r_chiral_restr 0.07 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3992 Nucleic Acid Atoms Solvent Atoms 202 Heterogen Atoms 55
Software Software Software Name Purpose REFMAC refinement XDS data reduction PDB_EXTRACT data extraction XSCALE data scaling MOLREP phasing