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Human carbonic anhydrase II with bound IrCp* complex (cofactor 9) to generate an artificial transfer hydrogenase (ATHase)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3ZP9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.9 293 2.6 M ammonium sulfate, 50 mM Tris-H2SO4
Crystal Properties Matthews coefficient Solvent content 2.13 42.26
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.232 α = 90 b = 41.441 β = 104.36 c = 72.374 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2018-11-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 1.000 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 40.95 98 0.134 0.995 13.5 9.3 70789
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.2 1.23 94.4 0.2 0.975 7 6.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3ZP9 1.2 40.95 70789 3708 98.03 0.163 0.1622 0.1718 0.1784 0.1894 RANDOM 14.7
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.1 -0.06 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.144 r_dihedral_angle_4_deg 21.397 r_dihedral_angle_3_deg 12.892 r_dihedral_angle_1_deg 7.045 r_angle_refined_deg 2.559 r_angle_other_deg 2.371 r_mcangle_it 2.129 r_mcbond_it 1.456 r_mcbond_other 1.453 r_chiral_restr 0.106
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.144 r_dihedral_angle_4_deg 21.397 r_dihedral_angle_3_deg 12.892 r_dihedral_angle_1_deg 7.045 r_angle_refined_deg 2.559 r_angle_other_deg 2.371 r_mcangle_it 2.129 r_mcbond_it 1.456 r_mcbond_other 1.453 r_chiral_restr 0.106 r_bond_other_d 0.034 r_gen_planes_other 0.021 r_bond_refined_d 0.017 r_gen_planes_refined 0.014
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2039 Nucleic Acid Atoms Solvent Atoms 268 Heterogen Atoms 42
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction Aimless data scaling PHASER phasing