X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
otherindividual A and B chains

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP2730.2M Am. Nitrate, 20% PEG 3350
Crystal Properties
Matthews coefficientSolvent content
2.4850.36

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 65.34α = 90
b = 121.67β = 106.39
c = 65.94γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 S 6M2013-11-08MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID290.972ESRFID29

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.0663.2695.70.03713.5360326
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.062.110.364

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTindividual A and B chains2.0628.4255407296795.730.190090.186650.25496RANDOM40.369
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.80.83-1.05-0.21
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.02
r_dihedral_angle_4_deg20.472
r_dihedral_angle_3_deg15.298
r_dihedral_angle_1_deg9.295
r_long_range_B_refined8.536
r_long_range_B_other8.534
r_scangle_other7.208
r_mcangle_it5.704
r_mcangle_other5.703
r_scbond_other5.268
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.02
r_dihedral_angle_4_deg20.472
r_dihedral_angle_3_deg15.298
r_dihedral_angle_1_deg9.295
r_long_range_B_refined8.536
r_long_range_B_other8.534
r_scangle_other7.208
r_mcangle_it5.704
r_mcangle_other5.703
r_scbond_other5.268
r_scbond_it5.267
r_mcbond_it4.525
r_mcbond_other4.523
r_angle_refined_deg2.011
r_angle_other_deg1.396
r_chiral_restr0.087
r_bond_refined_d0.015
r_gen_planes_refined0.013
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7117
Nucleic Acid Atoms
Solvent Atoms463
Heterogen Atoms6

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
PHASERphasing