☰ Navigation Tabs
Structure determination of transmembrane- C-terminal fragment of UL49.5 protein from bovine herpesvirus 1 by NMR spectroscopy and molecular dynamics
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-1H TOCSY 2.7 mM TMC.BHV, 100 mM DPC, 0.01 mM acetic acid -d4, 90 % H2O, 10 % D2O 50% H2O/50% D2O 0.05 mM 5 1 atm 303 Agilent Uniform NMR System 800 2 2D 1H-1H NOESY 2.7 mM TMC.BHV, 100 mM DPC, 0.01 mM acetic acid -d4, 90 % H2O, 10 % D2O 50% H2O/50% D2O 0.05 mM 5 1 atm 303 Agilent Uniform NMR System 800 3 2D DQF-COSY 2.7 mM TMC.BHV, 100 mM DPC, 0.01 mM acetic acid -d4, 90 % H2O, 10 % D2O 50% H2O/50% D2O 0.05 mM 5 1 atm 303 Agilent Uniform NMR System 800 4 2D 1H-1H ROESY 2.7 mM TMC.BHV, 100 mM DPC, 0.01 mM acetic acid -d4, 90 % H2O, 10 % D2O 50% H2O/50% D2O 0.05 mM 5 1 atm 303 Agilent Uniform NMR System 800
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Agilent Uniform NMR System 800
NMR Refinement Method Details Software molecular dynamics Amber
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 200 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 refinement Amber Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman 2 structure calculation CYANA Guntert, Mumenthaler and Wuthrich 3 chemical shift assignment Sparky Goddard 4 peak picking Sparky Goddard