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Glycogen Phosphorylase b in complex with 30
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 SMALL TUBES 6.7 289 10 mM BES buffer
Crystal Properties Matthews coefficient Solvent content 2.44 49.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 128.161 α = 90 b = 128.161 β = 90 c = 115.794 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 CCD AGILENT ATLAS CCD 2018-05-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SEALED TUBE OXFORD DIFFRACTION NOVA 1.5419
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 13.69 90.3 0.074 0.997 16.5 5.8 33997
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.49 76.8 0.402 0.925 3.3 4.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2.4 13.69 32266 1658 88.6 0.14366 0.14082 0.1528 0.19894 0.2008 RANDOM 27.811
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.25 0.25 -0.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.083 r_dihedral_angle_4_deg 20.302 r_dihedral_angle_3_deg 15.96 r_dihedral_angle_1_deg 6.964 r_long_range_B_refined 6.259 r_long_range_B_other 6.256 r_scangle_other 5.069 r_scbond_it 3.372 r_scbond_other 3.372 r_mcangle_it 3.2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.083 r_dihedral_angle_4_deg 20.302 r_dihedral_angle_3_deg 15.96 r_dihedral_angle_1_deg 6.964 r_long_range_B_refined 6.259 r_long_range_B_other 6.256 r_scangle_other 5.069 r_scbond_it 3.372 r_scbond_other 3.372 r_mcangle_it 3.2 r_mcangle_other 3.2 r_mcbond_it 2.081 r_mcbond_other 2.08 r_angle_refined_deg 1.527 r_angle_other_deg 0.961 r_chiral_restr 0.077 r_bond_refined_d 0.012 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6589 Nucleic Acid Atoms Solvent Atoms 228 Heterogen Atoms 71
Software Software Software Name Purpose REFMAC refinement CrysalisPro data reduction Aimless data scaling REFMAC phasing