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Nterminal domain of human SMU1 in complex with LSP641
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6Q8F
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 293 0.1 M Bis-Tris pH 6, 16-20 % PEG 10K, 0.2 M ammonium acetate
Crystal Properties Matthews coefficient Solvent content 3.12 60.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.193 α = 90 b = 72.193 β = 90 c = 183.164 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2016-02-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID30B 0.97625 ESRF ID30B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 44 97.4 0.051 16.86 5.27 26383
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.88 97.7 0.762 2.2 5.32
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6Q8F 1.8 43.72 25046 1343 97.43 0.16359 0.16061 0.22007 0.2432 RANDOM 43.95
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.19 -0.09 -0.19 0.62
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.576 r_sphericity_bonded 29.916 r_sphericity_free 26.291 r_dihedral_angle_4_deg 22.02 r_dihedral_angle_3_deg 13.972 r_scangle_other 11.891 r_scbond_other 10.681 r_scbond_it 10.676 r_long_range_B_other 10.306 r_long_range_B_refined 10.282
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.576 r_sphericity_bonded 29.916 r_sphericity_free 26.291 r_dihedral_angle_4_deg 22.02 r_dihedral_angle_3_deg 13.972 r_scangle_other 11.891 r_scbond_other 10.681 r_scbond_it 10.676 r_long_range_B_other 10.306 r_long_range_B_refined 10.282 r_mcangle_other 7.962 r_mcangle_it 7.952 r_mcbond_it 7.296 r_mcbond_other 7.261 r_rigid_bond_restr 6.246 r_dihedral_angle_1_deg 5.99 r_angle_refined_deg 1.457 r_angle_other_deg 1.39 r_chiral_restr 0.068 r_gen_planes_refined 0.018 r_bond_refined_d 0.007 r_gen_planes_other 0.005 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1489 Nucleic Acid Atoms Solvent Atoms 102 Heterogen Atoms 96
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling MOLREP phasing