X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP5.62930.2M ammonium acetate, 0.1M sodium citrate pH5.6, 32% PEG 400, 5mM magnesium chloride
Crystal Properties
Matthews coefficientSolvent content
1.8533.41

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 79.565α = 90
b = 106.329β = 90
c = 33.736γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDRAYONIX MX300-HS2016-07-13MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 22-ID1.0APS22-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Rrim I (All)Rpim I (All)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.630990.1160.1290.0559.94.738777
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.61.6695.40.3490.3970.1870.8914.054.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.63036512184499.110.217680.2170.23106RANDOM25.105
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.161.01-0.85
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.901
r_dihedral_angle_3_deg13.187
r_dihedral_angle_4_deg11.056
r_dihedral_angle_1_deg5.218
r_long_range_B_refined3.77
r_long_range_B_other3.698
r_scangle_other1.859
r_mcangle_it1.706
r_mcangle_other1.705
r_angle_refined_deg1.171
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.901
r_dihedral_angle_3_deg13.187
r_dihedral_angle_4_deg11.056
r_dihedral_angle_1_deg5.218
r_long_range_B_refined3.77
r_long_range_B_other3.698
r_scangle_other1.859
r_mcangle_it1.706
r_mcangle_other1.705
r_angle_refined_deg1.171
r_scbond_other1.157
r_scbond_it1.155
r_mcbond_it0.975
r_mcbond_other0.974
r_angle_other_deg0.912
r_chiral_restr0.061
r_bond_refined_d0.006
r_gen_planes_refined0.004
r_bond_other_d0.003
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2489
Nucleic Acid Atoms
Solvent Atoms163
Heterogen Atoms128

Software

Software
Software NamePurpose
DENZOdata reduction
HKL-2000data reduction
SCALEPACKdata scaling
HKL-2000data scaling
PHASERphasing
REFMACrefinement
Cootmodel building