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Structure of a bacterial Atm1-family ABC transporter with MgADP bound
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4MRN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.3 296 NaCl, MgCl2, Tris, PEG2000MME, ATP
Crystal Properties Matthews coefficient Solvent content 3.82 67.77
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 129.18 α = 110.62 b = 133.61 β = 98.28 c = 134.26 γ = 101.2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2016-06-25 M SINGLE WAVELENGTH 2 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2016-11-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL12-2 0.97946 SSRL BL12-2 2 SYNCHROTRON SSRL BEAMLINE BL12-2 0.97949 SSRL BL12-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.7 39.61 97.55 0.167 0.18 0.067 0.999 7.31 7.1 84628 141.79
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.7 3.832 89.28 3.05 3.283 1.206 0.412 0.74 7.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 4MRN 3.7 39.606 1.96 83474 4185 97.63 0.2406 0.2382 0.2399 0.2858 0.2833 178.1364
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 36615 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 224
Software Software Software Name Purpose PHENIX refinement REFMAC refinement PHASER phasing AutoSol phasing PDB_EXTRACT data extraction Aimless data scaling XDS data reduction Blu-Ice data collection