6P6C
CS-Rosetta Model of PEA-15 Death Effector Domain in the Complex with ERK2
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 10 mM sodium phosphate, 150 mM sodium chloride, 0.1 mM DTT, 50 uM sodium azide | 90% H2O/10% D2O | 150 mM | 7.0 | 1 atm | 298 | Bruker AVANCE 800 |
2 | 3D CBCA(CO)NH | 10 mM sodium phosphate, 150 mM sodium chloride, 0.1 mM DTT, 50 uM sodium azide | 90% H2O/10% D2O | 150 mM | 7.0 | 1 atm | 298 | Bruker AVANCE 800 |
3 | 3D HNCACB | 10 mM sodium phosphate, 150 mM sodium chloride, 0.1 mM DTT, 50 uM sodium azide | 90% H2O/10% D2O | 150 mM | 7.0 | 1 atm | 298 | Bruker AVANCE 800 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | CS-ROSETTA |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 3000 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
2 | refinement | CS-ROSETTA | Shen, Vernon, Baker and Bax | |
3 | chemical shift assignment | NMRView | Johnson, One Moon Scientific | |
4 | peak picking | NMRView | Johnson, One Moon Scientific | |
5 | structure calculation | CS-ROSETTA | Shen, Vernon, Baker and Bax |