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NMR solution structure of YfiD
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.7 mM [U-15N] YfiD, 18 mM HEPES, 2.7 mM ammonium sulfate, 10 % v/v D2O 90% H2O/10% D2O 2.7 mM 7.2 760 mmHg 293 FBML CMR 600 E 600 2 2D 1H-15N HSQC 1.3 mM [U-100% 13C; U-100% 15N] YfiD, 18 mM HEPES, 2.7 mM ammonium sulfate, 10 % v/v D2O 90% H2O/10% D2O 2.7 mM 7.2 760 mmHg 293 Varian INOVA 800 6 2D 1H-15N HSQC 1.3 mM [U-100% 13C; U-100% 15N] YfiD, 18 mM HEPES, 2.7 mM ammonium sulfate, 10 % v/v D2O 90% H2O/10% D2O 2.7 mM 7.2 760 mmHg 293 Varian INOVA 800 3 3D 1H-15N NOESY 0.7 mM [U-15N] YfiD, 18 mM HEPES, 2.7 mM ammonium sulfate, 10 % v/v D2O 90% H2O/10% D2O 2.7 mM 7.2 760 mmHg 293 FBML CMR 600 E 600 4 3D 1H-15N TOCSY 0.7 mM [U-15N] YfiD, 18 mM HEPES, 2.7 mM ammonium sulfate, 10 % v/v D2O 90% H2O/10% D2O 2.7 mM 7.2 760 mmHg 293 FBML CMR 600 E 600 5 3D HNCA 1.3 mM [U-100% 13C; U-100% 15N] YfiD, 18 mM HEPES, 2.7 mM ammonium sulfate, 10 % v/v D2O 90% H2O/10% D2O 2.7 mM 7.2 760 mmHg 293 Varian INOVA 800 7 3D HNCACB 1.3 mM [U-100% 13C; U-100% 15N] YfiD, 18 mM HEPES, 2.7 mM ammonium sulfate, 10 % v/v D2O 90% H2O/10% D2O 2.7 mM 7.2 760 mmHg 293 Varian INOVA 800 8 3D HBHA(CO)NH 1.3 mM [U-100% 13C; U-100% 15N] YfiD, 18 mM HEPES, 2.7 mM ammonium sulfate, 10 % v/v D2O 90% H2O/10% D2O 2.7 mM 7.2 760 mmHg 293 Varian INOVA 800
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 800 2 FBML CMR 600 E 600
NMR Refinement Method Details Software molecular dynamics X-PLOR NIH
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 200 Conformers Submitted Total Number 10 Representative Model 1 (medoid)
Computation: NMR Software # Classification Version Software Name Author 2 collection VNMR Varian 6 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 4 chemical shift assignment Sparky Goddard 5 peak picking Sparky Goddard 7 structure calculation Sparky Goddard 8 structure calculation CYANA Guntert, Mumenthaler and Wuthrich 9 structure calculation X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore 1 refinement X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore