☰ Navigation Tabs
Horse liver F93W alcohol dehydrogenase complexed with NAD and trifluoroethanol
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6OWM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICRODIALYSIS 7 298 50 mM ammonium N-[tris(hydroxymethyl)methyl]-2-aminoethanne sulfonate, pH 6.7 (at 25 deg C), 0,25 mM EDTA, 10 mg/ml protein, 1 mM NAD+, 100 mM 2,2,2-trifluoroethanol, 12-15 % 2-methyl-2,4-pentanediol
Crystal Properties Matthews coefficient Solvent content 2.38 48.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.28 α = 92.12 b = 51.2 β = 102.98 c = 92.31 γ = 110.04
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 Rosenbaum-Rock vertically focussed mirrors 2008-02-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 4.2.2 0.827 ALS 4.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.14 19.97 91.2 0.049 0.057 12.2 3.71 244957
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.14 1.18 58.8 0.256 0.302 3.4 3.44
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6owm 1.14 19.97 242456 2481 91.14 0.1221 0.1219 0.1243 0.1421 0.1444 RANDOM 13.986
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.46 -0.31 0.27 0.16 0.08 -0.54
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.887 r_dihedral_angle_1_deg 17.398 r_dihedral_angle_4_deg 13.567 r_dihedral_angle_3_deg 11.047 r_rigid_bond_restr 2.322 r_angle_refined_deg 1.893 r_angle_other_deg 1.561 r_chiral_restr 0.111 r_bond_refined_d 0.014 r_gen_planes_refined 0.009
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.887 r_dihedral_angle_1_deg 17.398 r_dihedral_angle_4_deg 13.567 r_dihedral_angle_3_deg 11.047 r_rigid_bond_restr 2.322 r_angle_refined_deg 1.893 r_angle_other_deg 1.561 r_chiral_restr 0.111 r_bond_refined_d 0.014 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5576 Nucleic Acid Atoms Solvent Atoms 1055 Heterogen Atoms 148
Software Software Software Name Purpose d*TREK data scaling REFMAC refinement PDB_EXTRACT data extraction d*TREK data reduction REFMAC phasing