6ON0

STRUCTURE OF N15 CRO COMPLEXED WITH CONSENSUS OPERATOR DNA


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2HIN 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP2980.4 M ammonium phosphate monobasic
Crystal Properties
Matthews coefficientSolvent content
3.0159.13

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 56.64α = 90
b = 56.64β = 90
c = 195.93γ = 90
Symmetry
Space GroupP 41 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152006-12-09MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL9-20.9794SSRLBL9-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.628.798.70.0660.019113.212.742733-342.2
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.61.6385.32.81.70.2146.74.3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2HIN1.628.31242731267590.206390.205810.21724RANDOM26.492
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.03-1.032.05
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.347
r_dihedral_angle_4_deg17.541
r_dihedral_angle_3_deg16.008
r_dihedral_angle_1_deg5.514
r_long_range_B_refined5.011
r_long_range_B_other4.968
r_angle_refined_deg1.871
r_angle_other_deg1.549
r_scangle_other1.342
r_scbond_it0.807
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.347
r_dihedral_angle_4_deg17.541
r_dihedral_angle_3_deg16.008
r_dihedral_angle_1_deg5.514
r_long_range_B_refined5.011
r_long_range_B_other4.968
r_angle_refined_deg1.871
r_angle_other_deg1.549
r_scangle_other1.342
r_scbond_it0.807
r_scbond_other0.807
r_mcangle_it0.795
r_mcangle_other0.795
r_mcbond_it0.452
r_mcbond_other0.445
r_chiral_restr0.097
r_gen_planes_refined0.016
r_bond_refined_d0.011
r_gen_planes_other0.003
r_bond_other_d0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms977
Nucleic Acid Atoms673
Solvent Atoms144
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
iMOSFLMdata reduction
Aimlessdata scaling
MOLREPphasing