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Solution structure of the H-NOX protein from Shewanella woodyi in the Fe(II)CO ligation state
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 500 uM [U-99% 15N] protein 90% H2O/10% D2O 50 mM 7.5 1 atm 293 Agilent agilent 800 800 20 2D 1H-15N TROSY 500 uM [U-99% 15N] protein 90% H2O/10% D2O 50 mM 7.5 1 atm 293 Bruker AVANCE NEO 600 19 2D 1H-15N TROSY 500 uM [U-99% 15N] protein 90% H2O/10% D2O 50 mM 7.5 1 atm 293 Bruker AVANCE NEO 600 8 2D 1H-13C HSQC aliphatic 800 uM [U-99% 13C; U-99% 15N] protein 100% D2O 50 mM 7.5 1 atm 293 Agilent agilent 800 800 9 2D 1H-13C HSQC aromatic 800 uM [U-99% 13C; U-99% 15N] protein 100% D2O 50 mM 7.5 1 atm 293 Agilent agilent 800 800 2 3D HNCO 800 uM [U-99% 13C; U-99% 15N] protein 90% H2O/10% D2O 50 mM 7.5 1 atm 293 Agilent agilent 800 800 3 3D HNCA 800 uM [U-99% 13C; U-99% 15N] protein 90% H2O/10% D2O 50 mM 7.5 1 atm 293 Agilent agilent 800 800 4 3D HNCACB 800 uM [U-99% 13C; U-99% 15N] protein 90% H2O/10% D2O 50 mM 7.5 1 atm 293 Agilent agilent 800 800 5 3D HN(CO)CA 800 uM [U-99% 13C; U-99% 15N] protein 90% H2O/10% D2O 50 mM 7.5 1 atm 293 Agilent agilent 800 800 6 3D CBCA(CO)NH 800 uM [U-99% 13C; U-99% 15N] protein 90% H2O/10% D2O 50 mM 7.5 1 atm 293 Agilent agilent 800 800 7 3D HCACOCANH 800 uM [U-99% 13C; U-99% 15N] protein 90% H2O/10% D2O 50 mM 7.5 1 atm 293 Agilent agilent 800 800 10 3D H(CCO)NH 800 uM [U-99% 13C; U-99% 15N] protein 90% H2O/10% D2O 50 mM 7.5 1 atm 293 Agilent agilent 800 800 11 3D C(CO)NH 800 uM [U-99% 13C; U-99% 15N] protein 90% H2O/10% D2O 50 mM 7.5 1 atm 293 Agilent agilent 800 800 12 3D HCCH-TOCSY 800 uM [U-99% 13C; U-99% 15N] protein 100% D2O 50 mM 7.5 1 atm 293 Agilent agilent 800 800 13 3D HCCH-COSY 800 uM [U-99% 13C; U-99% 15N] protein 100% D2O 50 mM 7.5 1 atm 293 Agilent agilent 800 800 14 3D HBHA(CO)NH 800 uM [U-99% 13C; U-99% 15N] protein 90% H2O/10% D2O 50 mM 7.5 1 atm 293 Agilent agilent 800 800 15 3D 1H-15N NOESY 800 uM [U-99% 13C; U-99% 15N] protein 90% H2O/10% D2O 50 mM 7.5 1 atm 293 Agilent agilent 800 800 16 3D 1H-13C NOESY aliphatic 800 uM [U-99% 13C; U-99% 15N] protein 100% D2O 50 mM 7.5 1 atm 293 Agilent agilent 800 800 17 3D 1H-13C NOESY aromatic 800 uM [U-99% 13C; U-99% 15N] protein 100% D2O 50 mM 7.5 1 atm 293 Agilent agilent 800 800 18 2D 13C15Nfiltered NOESY 800 uM [U-99% 13C; U-99% 15N] protein 100% D2O 50 mM 7.5 1 atm 293 Agilent agilent 800 800
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Agilent agilent 800 800 2 Bruker AVANCE NEO 600 3 Bruker AVANCE NEO 800
NMR Refinement Method Details Software simulated annealing distance geometry, torsion angle dynamics, molecular dynamics X-PLOR NIH
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 200 Conformers Submitted Total Number 20 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 refinement X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore 2 structure calculation X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore 3 chemical shift assignment Sparky Sparky: Goddard
NMRFAM-Sparky: Lee W, Tonelli M, Markley JL 4 peak picking Sparky Sparky: Goddard
NMRFAM-Sparky: Lee W, Tonelli M, Markley JL 5 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 6 collection VNMR Varian 7 collection TopSpin Bruker Biospin