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Crystal structure of Csm6 W14A/E337A mutant in complex with cA4 by cocrystallization
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.2 293 10% PEG 8K, 0.2 M NaCl, 0.1 M
Na/K phosphate pH 6.2
Crystal Properties Matthews coefficient Solvent content 2.54 51.62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.148 α = 90 b = 115.745 β = 90 c = 161.037 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2018-12-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-E 0.9791 APS 24-ID-E
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 50 95.8 9.9 9.2 56521
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.18
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.11 49.09 53626 2838 95.65 0.20258 0.20012 0.2075 0.24923 0.253 RANDOM 48.038
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.17 4.36 -1.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.593 r_dihedral_angle_4_deg 19.421 r_dihedral_angle_3_deg 18.536 r_long_range_B_other 9.553 r_long_range_B_refined 9.552 r_dihedral_angle_1_deg 7.174 r_scangle_other 7.167 r_mcangle_it 4.844 r_mcangle_other 4.844 r_scbond_other 4.633
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.593 r_dihedral_angle_4_deg 19.421 r_dihedral_angle_3_deg 18.536 r_long_range_B_other 9.553 r_long_range_B_refined 9.552 r_dihedral_angle_1_deg 7.174 r_scangle_other 7.167 r_mcangle_it 4.844 r_mcangle_other 4.844 r_scbond_other 4.633 r_scbond_it 4.632 r_mcbond_it 3.344 r_mcbond_other 3.341 r_angle_refined_deg 1.612 r_angle_other_deg 1.237 r_chiral_restr 0.075 r_bond_refined_d 0.008 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6854 Nucleic Acid Atoms Solvent Atoms 96 Heterogen Atoms 176
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHENIX phasing