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Crystal structure of IDH1 R132H mutant in complex with compound 24
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 20% PEG MME 5000, 0.1 M Bicine pH 8.5, and 0.2 M Sodium formate.
Crystal Properties Matthews coefficient Solvent content 2.58 52.31
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 165.679 α = 90 b = 63.496 β = 99.52 c = 143.598 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2012-07-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 1.0750 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 50 98.6 15.8 2.8 36650
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.8 50 34299 1803 98.28 0.21199 0.20859 0.2079 0.2745 0.2704 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.23 0.94 -2.04 1.85
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.923 r_dihedral_angle_4_deg 23.748 r_dihedral_angle_3_deg 21.752 r_dihedral_angle_1_deg 7.015 r_long_range_B_refined 4.637 r_long_range_B_other 4.637 r_angle_other_deg 3.79 r_mcangle_it 1.851 r_mcangle_other 1.851 r_scangle_other 1.634
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.923 r_dihedral_angle_4_deg 23.748 r_dihedral_angle_3_deg 21.752 r_dihedral_angle_1_deg 7.015 r_long_range_B_refined 4.637 r_long_range_B_other 4.637 r_angle_other_deg 3.79 r_mcangle_it 1.851 r_mcangle_other 1.851 r_scangle_other 1.634 r_angle_refined_deg 1.565 r_mcbond_it 1.045 r_mcbond_other 1.045 r_scbond_it 0.954 r_scbond_other 0.954 r_chiral_restr 0.08 r_bond_refined_d 0.011 r_gen_planes_other 0.006 r_gen_planes_refined 0.005 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9735 Nucleic Acid Atoms Solvent Atoms 23 Heterogen Atoms 220
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling PHASER phasing