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CopC from Pseudomonas fluorescens
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2C9Q PDB entry 2C9Q
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.7 293 2.5 M ammonium sulfate, 0.1 M Bis-Tris propane, pH 6.7, 2 mM yttrium chloride hexahydrate
Crystal Properties Matthews coefficient Solvent content 2.34 47.55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.73 α = 90 b = 111.319 β = 90 c = 82.222 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2015-04-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 0.9537 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 46 99.5 9.7 6 23030
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 2C9Q 2 46 23030 1238 99.5 0.2296 0.22791 0.2313 0.25988 0.2631 RANDOM 39.18
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 31.11 -11.18 -19.93
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.526 r_dihedral_angle_4_deg 20.394 r_dihedral_angle_3_deg 16.645 r_dihedral_angle_1_deg 7.167 r_long_range_B_refined 6.587 r_long_range_B_other 6.585 r_scangle_other 5.402 r_mcangle_it 3.854 r_mcangle_other 3.853 r_scbond_it 3.661
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.526 r_dihedral_angle_4_deg 20.394 r_dihedral_angle_3_deg 16.645 r_dihedral_angle_1_deg 7.167 r_long_range_B_refined 6.587 r_long_range_B_other 6.585 r_scangle_other 5.402 r_mcangle_it 3.854 r_mcangle_other 3.853 r_scbond_it 3.661 r_scbond_other 3.66 r_mcbond_it 2.978 r_mcbond_other 2.963 r_angle_refined_deg 1.367 r_angle_other_deg 0.869 r_chiral_restr 0.063 r_bond_refined_d 0.01 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2122 Nucleic Acid Atoms Solvent Atoms 96 Heterogen Atoms 4
Software Software Software Name Purpose HKL-2000 data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement