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T.elongatus NDH (data-set 2)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6NBQ
Sample NAD(P)H dehydrogenase-like complex (NDH/NDH-1_1/NDH1L)from T.elongatus
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details incubate on grid for 30 seconds and blot 2.5 seconds before plunging
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 34655 Reported Resolution (Å) 3.5 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 (6NBQ) Refinement Space REAL Refinement Protocol RIGID BODY FIT Refinement Target Corelation coefficient Overall B Value 20 Fitting Procedure Details
Data Acquisition Detector Type GATAN K2 SUMMIT (4k x 4k) Electron Dose (electrons/Å**2) 60
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) Maximum Defocus (nm) Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION Gautomatch 0.56 IMAGE ACQUISITION SerialEM CTF CORRECTION Gctf 1.06 CTF CORRECTION RELION 3.0.b2 MODEL FITTING Coot 0.8.8 MODEL FITTING PHENIX 1.13 INITIAL EULER ASSIGNMENT RELION 3.0.b2 FINAL EULER ASSIGNMENT RELION 3.0.b2 RECONSTRUCTION RELION 3.0.b2 MODEL REFINEMENT PHENIX 1.13
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 98145