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NMR solution structures of second bromodomain of BRD4 with FOXO3a peptide
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 100 mM sodium chloride, 10 mM sodium phosphate, 2 mM [U-100% 2H] DTT 95% H2O/5% D2O 6.5 1 atm 298 Bruker AVANCE 800 2 3D HNCACB 100 mM sodium chloride, 10 mM sodium phosphate, 2 mM [U-100% 2H] DTT 95% H2O/5% D2O 6.5 1 atm 298 Bruker AVANCE 800 3 3D CBCA(CO)NH 100 mM sodium chloride, 10 mM sodium phosphate, 2 mM [U-100% 2H] DTT 95% H2O/5% D2O 6.5 1 atm 298 Bruker AVANCE 800 4 3D 1H-15N NOESY 100 mM sodium chloride, 10 mM sodium phosphate, 2 mM [U-100% 2H] DTT 95% H2O/5% D2O 6.5 1 atm 298 Bruker AVANCE 700 5 3D 1H-13C NOESY aliphatic 100 mM sodium chloride, 10 mM sodium phosphate, 2 mM [U-100% 2H] DTT 100% D2O 6.5 1 atm 298 Bruker AVANCE 800 6 3D 1H-13C NOESY aromatic 100 mM sodium chloride, 10 mM sodium phosphate, 2 mM [U-100% 2H] DTT 100% D2O 6.5 1 atm 298 Bruker AVANCE 800 8 3D filtered 1H-13C NOESY aliphatic 100 mM sodium chloride, 10 mM sodium phosphate, 2 mM [U-100% 2H] DTT 100% D2O 6.5 1 atm 298 Bruker AVANCE 800 7 3D filtered 1H-13C NOESY aromatic 100 mM sodium chloride, 10 mM sodium phosphate, 2 mM [U-100% 2H] DTT 100% D2O 6.5 1 atm 298 Bruker AVANCE 500
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 800 2 Bruker AVANCE 500 3 Bruker AVANCE 700
NMR Refinement Method Details Software torsion angle dynamics CNS simulated annealing ARIA
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 200 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 refinement ARIA 2.3 Linge, O'Donoghue and Nilges 2 refinement CNS Brunger, Adams, Clore, Gros, Nilges and Read 3 chemical shift assignment NMRView 5 Johnson, One Moon Scientific 4 peak picking NMRView 5 Johnson, One Moon Scientific 5 data analysis ProcheckNMR Laskowski and MacArthur 6 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 7 collection TopSpin Bruker Biospin 8 structure calculation CNS Brunger, Adams, Clore, Gros, Nilges and Read