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High-viscosity injector-based Pink Beam Serial Crystallography of Micro-crystals at a Synchrotron Radiation Source.
Serial Crystallography (SX)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5UVL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH MODE 6.5 293 0.1 M MES pH 6.5, 0.5 M sodium nitrate, 0.1 M calcium chloride
Crystal Properties Matthews coefficient Solvent content 2.18 43.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68.3 α = 90 b = 68.3 β = 90 c = 108.3 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 CCD RAYONIX MX340-HS 2016-08-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-BM-D 1.03 APS 14-BM-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 57.8 61.3 0.102 23.3 9 14910
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.85
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5UVL 1.8 57.8 13447 1463 61.07 0.13408 0.12955 0.1402 0.17493 0.1816 RANDOM 9.764
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.298 r_dihedral_angle_4_deg 22.887 r_dihedral_angle_3_deg 13.678 r_dihedral_angle_1_deg 6.365 r_long_range_B_refined 4.499 r_long_range_B_other 4.364 r_scangle_other 2.625 r_angle_refined_deg 1.802 r_scbond_other 1.601 r_scbond_it 1.6
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.298 r_dihedral_angle_4_deg 22.887 r_dihedral_angle_3_deg 13.678 r_dihedral_angle_1_deg 6.365 r_long_range_B_refined 4.499 r_long_range_B_other 4.364 r_scangle_other 2.625 r_angle_refined_deg 1.802 r_scbond_other 1.601 r_scbond_it 1.6 r_angle_other_deg 1.097 r_mcangle_it 1.094 r_mcangle_other 1.094 r_mcbond_it 0.686 r_mcbond_other 0.685 r_chiral_restr 0.113 r_bond_refined_d 0.018 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2032 Nucleic Acid Atoms Solvent Atoms 137 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement Precognition data reduction PHASER phasing