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CRYSTAL STRUCTURE OF MUSKMELON ALLERGEN CUC M 2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5EM0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 277 2.8M sodium acetate trihydrate
Crystal Properties Matthews coefficient Solvent content 2.54 51.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 102.608 α = 90 b = 59.237 β = 90.02 c = 82.911 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210r 2018-07-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.97933 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 40 99.2 0.037 0.037 0.042 0.026 31.8 2.5 19535 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.44 100 0.309 0.309 0.607 0.368 0.876 2.3 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5em0 2.4 32.26 18524 990 99.16 0.23256 0.23093 0.2359 0.2611 0.2628 RANDOM 94.246
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -4.99 1.72 1.1 3.88
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.775 r_dihedral_angle_4_deg 29.421 r_dihedral_angle_3_deg 13.667 r_dihedral_angle_1_deg 8.132 r_long_range_B_refined 4.219 r_long_range_B_other 4.21 r_mcangle_it 1.493 r_mcangle_other 1.493 r_scangle_other 1.389 r_angle_refined_deg 1.294
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.775 r_dihedral_angle_4_deg 29.421 r_dihedral_angle_3_deg 13.667 r_dihedral_angle_1_deg 8.132 r_long_range_B_refined 4.219 r_long_range_B_other 4.21 r_mcangle_it 1.493 r_mcangle_other 1.493 r_scangle_other 1.389 r_angle_refined_deg 1.294 r_mcbond_it 0.878 r_mcbond_other 0.877 r_scbond_it 0.854 r_scbond_other 0.853 r_angle_other_deg 0.836 r_chiral_restr 0.063 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_gen_planes_other 0.004 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2889 Nucleic Acid Atoms Solvent Atoms 24 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-3000 data scaling HKL-3000 phasing MOLREP phasing BUCCANEER model building HKL-2000 data processing