Experiment: 6LUS

X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	5T3W

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP		289.15	Citric acid, Polyethylene glycol 3350

Crystal Properties
Matthews coefficient	Solvent content
2.85	56.91

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 73.886	α = 90
b = 73.886	β = 90
c = 53.405	γ = 120

Symmetry
Space Group	P 32 1 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS3 S 6M		2019-06-06	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SSRF BEAMLINE BL19U1	0.97852	SSRF	BL19U1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.4	50	100	0.995	56.96	19.9		32952

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.4	1.42			0.965

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	5T3W	1.4	30.401	32902	1676	99.921	0.177	0.1768	0.1822	23.21

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.007	0.003		0.007		-0.022

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	37.504
r_dihedral_angle_4_deg	18.026
r_dihedral_angle_3_deg	12.544
r_scangle_it	7.264
r_lrange_it	7.105
r_scbond_it	5.265
r_dihedral_angle_1_deg	5.214
r_mcangle_it	2.623
r_mcbond_it	2.152
r_angle_refined_deg	1.837

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	37.504
r_dihedral_angle_4_deg	18.026
r_dihedral_angle_3_deg	12.544
r_scangle_it	7.264
r_lrange_it	7.105
r_scbond_it	5.265
r_dihedral_angle_1_deg	5.214
r_mcangle_it	2.623
r_mcbond_it	2.152
r_angle_refined_deg	1.837
r_nbtor_refined	0.318
r_nbd_refined	0.216
r_xyhbond_nbd_refined	0.177
r_symmetry_xyhbond_nbd_refined	0.161
r_symmetry_nbd_refined	0.16
r_chiral_restr	0.11
r_bond_refined_d	0.017
r_gen_planes_refined	0.009

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	988
Nucleic Acid Atoms
Solvent Atoms	145
Heterogen Atoms

Software

Software
Software Name	Purpose
REFMAC	refinement
HKL-3000	data reduction
HKL-3000	data scaling
PHASER	phasing

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.