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The A form apo structure of NrS-1 C terminal region-CTR
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6K9C
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 291.15 2.8M Sodium acetate trihydrate pH 7.0
Crystal Properties Matthews coefficient Solvent content 2.93 58.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 150.719 α = 90 b = 150.392 β = 90 c = 149.437 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2018-05-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U1 0.9793 SSRF BL17U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 30 97.8 0.14 0.152 0.056 6.9 6 103498
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.64 92.7 0.435 0.517 0.272 0.037 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6K9C 2.65 29.56 89827 4723 95.87 0.2377 0.2332 0.2296 0.2784 0.2757 RANDOM 78.074
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -40.04 92.05 -52
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.422 r_dihedral_angle_3_deg 17.167 r_dihedral_angle_4_deg 16.53 r_dihedral_angle_1_deg 6.843 r_angle_refined_deg 1.517 r_angle_other_deg 1.177 r_chiral_restr 0.084 r_bond_refined_d 0.012 r_gen_planes_refined 0.008 r_bond_other_d 0.007
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.422 r_dihedral_angle_3_deg 17.167 r_dihedral_angle_4_deg 16.53 r_dihedral_angle_1_deg 6.843 r_angle_refined_deg 1.517 r_angle_other_deg 1.177 r_chiral_restr 0.084 r_bond_refined_d 0.012 r_gen_planes_refined 0.008 r_bond_other_d 0.007 r_gen_planes_other 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 19841 Nucleic Acid Atoms Solvent Atoms 20 Heterogen Atoms 2
Software Software Software Name Purpose HKL-3000 data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-3000 data reduction PHASER phasing