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S. aureus FtsZ in complex with 3-(1-(5-bromo-4-(4-(trifluoromethyl)phenyl)oxazol-2-yl)ethoxy)-2,6-difluorobenzamide (compound 2)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3VOA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.8 293 100 mM Tris-HCl, 45% (w/v) PEP629, 300 mM KCl
Crystal Properties Matthews coefficient Solvent content 2.35 47.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.491 α = 90 b = 51.739 β = 108.65 c = 86.737 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX300HE 2017-10-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL44XU 0.900 SPring-8 BL44XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 50 99.2 0.072 0.079 0.032 8.2 6.2 58167
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.42 100 0.704 0.771 0.31 0.871 6.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3VOA 1.4 41.09 55292 2861 99.17 0.1465 0.1449 0.1445 0.177 0.177 RANDOM 21.114
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 -0.01 0.03 -0.01
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 35.528 r_dihedral_angle_2_deg 35.16 r_dihedral_angle_3_deg 11.864 r_dihedral_angle_4_deg 11.33 r_sphericity_bonded 11.009 r_dihedral_angle_1_deg 5.254 r_angle_refined_deg 1.434 r_rigid_bond_restr 1.08 r_angle_other_deg 0.897 r_chiral_restr 0.072
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 35.528 r_dihedral_angle_2_deg 35.16 r_dihedral_angle_3_deg 11.864 r_dihedral_angle_4_deg 11.33 r_sphericity_bonded 11.009 r_dihedral_angle_1_deg 5.254 r_angle_refined_deg 1.434 r_rigid_bond_restr 1.08 r_angle_other_deg 0.897 r_chiral_restr 0.072 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2211 Nucleic Acid Atoms Solvent Atoms 340 Heterogen Atoms 59
Software Software Software Name Purpose HKL-2000 data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction