6KOW
Retracted state of S65/T66 double-phosphorylated ubiquitin
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 20 mM HEPES, 150 mM sodium chloride | 90% H2O/10% D2O | 150 mM | 7.4 | 760 mmHg | 298 | Bruker AVANCE III 600 |
2 | 3D HNCA | 20 mM HEPES, 150 mM sodium chloride | 90% H2O/10% D2O | 150 mM | 7.4 | 760 mmHg | 298 | Bruker AVANCE III 850 |
3 | 3D HNCB | 20 mM HEPES, 150 mM sodium chloride | 90% H2O/10% D2O | 150 mM | 7.4 | 760 mmHg | 298 | Bruker AVANCE III 850 |
4 | 3D 1H-15N NOESY | 20 mM HEPES, 150 mM sodium chloride | 90% H2O/10% D2O | 150 mM | 7.4 | 760 mmHg | 298 | Bruker AVANCE III 850 |
5 | 3D 1H-13C NOESY | 20 mM HEPES, 150 mM sodium chloride | 90% H2O/10% D2O | 150 mM | 7.4 | 760 mmHg | 298 | Bruker AVANCE III 850 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE III | 600 |
2 | Bruker | AVANCE III | 850 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | X-PLOR NIH |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 240 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
2 | structure calculation | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
3 | chemical shift assignment | CcpNmr Analysis | CCPN | |
4 | peak picking | CcpNmr Analysis | CCPN |