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Crystal structure of C-domain of baterial malonyl-CoA reductase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 295 Li2SO4, HEPES
Crystal Properties Matthews coefficient Solvent content 3.03 59.42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 110.34 α = 90 b = 116.687 β = 90 c = 134.113 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 270 2018-07-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 7A (6B, 6C1) 0.97934 PAL/PLS 7A (6B, 6C1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50 97.8 0.069 0.028 0.996 31.2 5.2 156374
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.83 0.381 0.187 0.736
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.8 29.86 148562 7789 97.76 0.1755 0.1737 0.2042 0.1929 RANDOM 26.395
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.73 -0.38 -0.36
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.445 r_dihedral_angle_4_deg 17.419 r_dihedral_angle_3_deg 14.04 r_dihedral_angle_1_deg 6.595 r_angle_refined_deg 1.673 r_angle_other_deg 1.456 r_chiral_restr 0.084 r_bond_refined_d 0.012 r_gen_planes_refined 0.009 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.445 r_dihedral_angle_4_deg 17.419 r_dihedral_angle_3_deg 14.04 r_dihedral_angle_1_deg 6.595 r_angle_refined_deg 1.673 r_angle_other_deg 1.456 r_chiral_restr 0.084 r_bond_refined_d 0.012 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10158 Nucleic Acid Atoms Solvent Atoms 1093 Heterogen Atoms 72
Software Software Software Name Purpose HKL-2000 data reduction SOLVE phasing RESOLVE model building REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data scaling