X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 4R2S 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP29312% PEG 3,350, 0.2 M NH4F
Crystal Properties
Matthews coefficientSolvent content
3.7967.55

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 89.16α = 90
b = 89.16β = 90
c = 72.603γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 S 6M2016-04-18MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRF BEAMLINE BL19U10.97853SSRFBL19U1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.053099.90.05352.1617.718924
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.052.120.59

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4R2S2.15301564381099.840.207010.204880.24923RANDOM65.583
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.530.53-1.06
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.889
r_dihedral_angle_4_deg24.087
r_dihedral_angle_3_deg19.334
r_long_range_B_other9.536
r_long_range_B_refined9.529
r_scangle_other7.871
r_dihedral_angle_1_deg7.388
r_mcangle_it7.172
r_mcangle_other7.168
r_scbond_it6.142
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.889
r_dihedral_angle_4_deg24.087
r_dihedral_angle_3_deg19.334
r_long_range_B_other9.536
r_long_range_B_refined9.529
r_scangle_other7.871
r_dihedral_angle_1_deg7.388
r_mcangle_it7.172
r_mcangle_other7.168
r_scbond_it6.142
r_scbond_other6.122
r_mcbond_it5.633
r_mcbond_other5.632
r_angle_refined_deg1.963
r_angle_other_deg1.468
r_chiral_restr0.102
r_bond_refined_d0.015
r_gen_planes_refined0.014
r_bond_other_d0.003
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms739
Nucleic Acid Atoms465
Solvent Atoms24
Heterogen Atoms31

Software

Software
Software NamePurpose
REFMACrefinement
HKL-3000data reduction
HKL-3000data scaling
PHASERphasing