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Photoswitchable fluorescent protein Gamillus, N150C/T204V double mutant, on-state
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5Y00
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 298 mmonium phosphate, sodium citrate, sodium chloride, HEPES, pH5.0
Crystal Properties Matthews coefficient Solvent content 5.77 78.69
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 161.492 α = 90 b = 161.492 β = 90 c = 161.492 γ = 90
Symmetry Space Group I 21 3
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ 2018-12-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E+ SUPERBRIGHT 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.99 46.619 100 0.071 0.073 0.999 27.64 14.402 47626 26.014
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.99 2.12 100 0.254 0.264 0.986 8.75 13.78
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5Y00 1.99 46.62 45244 2382 99.99 0.1435 0.1427 0.1602 0.1657 RANDOM 22.005
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.156 r_dihedral_angle_4_deg 14.563 r_dihedral_angle_3_deg 12.136 r_dihedral_angle_1_deg 7.196 r_angle_refined_deg 2.709 r_angle_other_deg 1.214 r_chiral_restr 0.169 r_bond_refined_d 0.031 r_gen_planes_refined 0.017 r_gen_planes_other 0.003
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.156 r_dihedral_angle_4_deg 14.563 r_dihedral_angle_3_deg 12.136 r_dihedral_angle_1_deg 7.196 r_angle_refined_deg 2.709 r_angle_other_deg 1.214 r_chiral_restr 0.169 r_bond_refined_d 0.031 r_gen_planes_refined 0.017 r_gen_planes_other 0.003 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1811 Nucleic Acid Atoms Solvent Atoms 218 Heterogen Atoms 483
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PDB_EXTRACT data extraction MOLREP phasing