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Ciclopirox inhibits Hepatitis B Virus secretion by blocking capsid assembly
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 295 100mM ammonium citrate pH 6.0, 14% PEG5000MME, 2% hexylene glycol, 10% isopropanol
Crystal Properties Matthews coefficient Solvent content 2.89 57.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 153.924 α = 90 b = 88.51 β = 121.13 c = 99.162 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 80 CCD ADSC QUANTUM 270 2018-03-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 7A (6B, 6C1) 0.97934 PAL/PLS 7A (6B, 6C1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 84.89 97.99 30.1 3.5 47285
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.38
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.3 30.7 47285 2382 97.99 0.25975 0.25747 0.2619 0.30346 0.3092 RANDOM 73.711
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.44 1.59 -4.66 3.57
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.418 r_dihedral_angle_4_deg 22.201 r_dihedral_angle_3_deg 15.803 r_long_range_B_refined 6.978 r_long_range_B_other 6.954 r_dihedral_angle_1_deg 5.935 r_mcangle_it 2.399 r_mcangle_other 2.399 r_scangle_other 2.126 r_mcbond_it 1.41
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.418 r_dihedral_angle_4_deg 22.201 r_dihedral_angle_3_deg 15.803 r_long_range_B_refined 6.978 r_long_range_B_other 6.954 r_dihedral_angle_1_deg 5.935 r_mcangle_it 2.399 r_mcangle_other 2.399 r_scangle_other 2.126 r_mcbond_it 1.41 r_mcbond_other 1.41 r_angle_refined_deg 1.367 r_angle_other_deg 1.252 r_scbond_it 1.241 r_scbond_other 1.241 r_chiral_restr 0.07 r_gen_planes_refined 0.006 r_bond_refined_d 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6609 Nucleic Acid Atoms Solvent Atoms 292 Heterogen Atoms 45
Software Software Software Name Purpose REFMAC refinement DENZO data reduction HKL-2000 data scaling PHASER phasing