X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2HG4 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION6.22930.2M K2HPO4 pH 6, 7% PEG 3350
Crystal Properties
Matthews coefficientSolvent content
2.6753.85

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 214.728α = 90
b = 100.303β = 113.07
c = 103.409γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCD2016-03-17MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRF BEAMLINE BL19U10.9792SSRFBL19U1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.795098.56223.4176984
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.791.84

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2HG41.7950176984863098.560.18880.187330.21863RANDOM24.104
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.83-0.542.91-1.19
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg27.777
r_dihedral_angle_4_deg18.895
r_dihedral_angle_3_deg13.551
r_long_range_B_refined7.857
r_long_range_B_other7.772
r_scangle_other6.514
r_dihedral_angle_1_deg6.308
r_scbond_it4.721
r_scbond_other4.569
r_mcangle_it3.485
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg27.777
r_dihedral_angle_4_deg18.895
r_dihedral_angle_3_deg13.551
r_long_range_B_refined7.857
r_long_range_B_other7.772
r_scangle_other6.514
r_dihedral_angle_1_deg6.308
r_scbond_it4.721
r_scbond_other4.569
r_mcangle_it3.485
r_mcangle_other3.485
r_mcbond_it2.716
r_mcbond_other2.709
r_angle_refined_deg1.179
r_angle_other_deg0.691
r_chiral_restr0.087
r_gen_planes_refined0.016
r_bond_refined_d0.013
r_gen_planes_other0.002
r_bond_other_d0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms12426
Nucleic Acid Atoms
Solvent Atoms1274
Heterogen Atoms30

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing