X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 4N7U 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP298BIS-TRIS ,Ammonium sulfate
Crystal Properties
Matthews coefficientSolvent content
2.0339.38

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 80.067α = 90
b = 73.47β = 111.39
c = 74.896γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDRAYONIX MX-3002017-10-02MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSRRC BEAMLINE BL15A11.0NSRRCBL15A1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.952597.50.05831.374.128751
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.952.020.88

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4N7U1.952527305144397.370.178820.1760.23435RANDOM34.728
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.99-2.921.35-0.81
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.619
r_dihedral_angle_4_deg19.286
r_dihedral_angle_3_deg15.052
r_long_range_B_refined8.851
r_long_range_B_other8.841
r_dihedral_angle_1_deg8.151
r_scangle_other7.112
r_scbond_it5.31
r_scbond_other5.126
r_mcangle_it4.669
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.619
r_dihedral_angle_4_deg19.286
r_dihedral_angle_3_deg15.052
r_long_range_B_refined8.851
r_long_range_B_other8.841
r_dihedral_angle_1_deg8.151
r_scangle_other7.112
r_scbond_it5.31
r_scbond_other5.126
r_mcangle_it4.669
r_mcangle_other4.668
r_mcbond_other3.629
r_mcbond_it3.628
r_angle_refined_deg1.327
r_angle_other_deg0.672
r_chiral_restr0.089
r_gen_planes_refined0.015
r_bond_refined_d0.01
r_gen_planes_other0.002
r_bond_other_d0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3062
Nucleic Acid Atoms
Solvent Atoms222
Heterogen Atoms40

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing