☰ Navigation Tabs
Circular permutant of ribosomal protein S6, adding 6aa to C terminal of P68-69, L75A mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1RIS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.2 M Lithium sulphate 0.1 M Tris pH 8.5
40% v/v PEG 400
Crystal Properties Matthews coefficient Solvent content 1.75 29.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.651 α = 90 b = 48.659 β = 90 c = 132.74 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2017-06-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) 0.9763 PETRA III, EMBL c/o DESY P14 (MX2)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 44.25 99.6 0.086 0.09 0.026 0.998 12.5 11.8 25756
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.52 99.2 0.63 0.659 0.193 0.655 11.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1Ris 1.5 44.25 24441 1274 99.5 0.192 0.19 0.1994 0.233 0.2388 RANDOM 27.15
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.4 0.8 -0.4
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.739 r_dihedral_angle_4_deg 21.299 r_dihedral_angle_3_deg 14.693 r_dihedral_angle_1_deg 6.491 r_angle_refined_deg 1.892 r_angle_other_deg 1.015 r_chiral_restr 0.117 r_bond_refined_d 0.019 r_gen_planes_refined 0.012 r_bond_other_d 0.003
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.739 r_dihedral_angle_4_deg 21.299 r_dihedral_angle_3_deg 14.693 r_dihedral_angle_1_deg 6.491 r_angle_refined_deg 1.892 r_angle_other_deg 1.015 r_chiral_restr 0.117 r_bond_refined_d 0.019 r_gen_planes_refined 0.012 r_bond_other_d 0.003 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1574 Nucleic Acid Atoms Solvent Atoms 67 Heterogen Atoms 10
Software Software Software Name Purpose Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction iMOSFLM data reduction MOLREP phasing