X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 6G33 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7.527724-28% 1,2-propanediol, 5% glycerol, 0.1M sodium/potassium phosphate
Crystal Properties
Matthews coefficientSolvent content
2.5852.26

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 57.129α = 90
b = 117.55β = 99.1
c = 92.27γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 2M2016-02-26MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I04-10.92819DiamondI04-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.5591.1197.30.1368.85.438161
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.552.6994.30.75724.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT6G332.5591.1136172196797.10.194910.193450.22146RANDOM51.62
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.29-0.64-1.230.14
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.984
r_dihedral_angle_4_deg17.808
r_dihedral_angle_3_deg14.568
r_dihedral_angle_1_deg6.323
r_long_range_B_refined4.922
r_long_range_B_other4.922
r_scangle_other2.249
r_mcangle_it2.042
r_mcangle_other2.042
r_angle_refined_deg1.394
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.984
r_dihedral_angle_4_deg17.808
r_dihedral_angle_3_deg14.568
r_dihedral_angle_1_deg6.323
r_long_range_B_refined4.922
r_long_range_B_other4.922
r_scangle_other2.249
r_mcangle_it2.042
r_mcangle_other2.042
r_angle_refined_deg1.394
r_scbond_it1.342
r_scbond_other1.341
r_angle_other_deg1.158
r_mcbond_it1.146
r_mcbond_other1.146
r_chiral_restr0.086
r_bond_refined_d0.013
r_gen_planes_refined0.008
r_bond_other_d0.006
r_gen_planes_other0.006
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms8276
Nucleic Acid Atoms
Solvent Atoms136
Heterogen Atoms131

Software

Software
Software NamePurpose
REFMACrefinement
iMOSFLMdata reduction
SCALAdata scaling
PHASERphasing