6I2Z

Isolated globin domain of the Bordetella pertussis globin-coupled sensor


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 4UIQ 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6.5277.151.6 M magnesium sulphate and 0.1 M MES pH 6.5
Crystal Properties
Matthews coefficientSolvent content
2.5852.35

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 104.96α = 90
b = 86.72β = 93.34
c = 41.82γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2012-07-19MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID23-20.87260ESRFID23-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.266.8199.20.2463.42.86186
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
13.23.3799.50.5272

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4uiq3.266.81557561099.060.212350.209460.23983RANDOM40.077
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.19-1.760.29-1.26
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.277
r_dihedral_angle_3_deg17.984
r_dihedral_angle_4_deg17.366
r_long_range_B_refined6.797
r_long_range_B_other6.796
r_dihedral_angle_1_deg5.972
r_mcangle_it3.628
r_mcangle_other3.627
r_scangle_other3.397
r_mcbond_it2.123
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.277
r_dihedral_angle_3_deg17.984
r_dihedral_angle_4_deg17.366
r_long_range_B_refined6.797
r_long_range_B_other6.796
r_dihedral_angle_1_deg5.972
r_mcangle_it3.628
r_mcangle_other3.627
r_scangle_other3.397
r_mcbond_it2.123
r_mcbond_other2.123
r_angle_other_deg2.089
r_scbond_it1.996
r_scbond_other1.996
r_angle_refined_deg1.454
r_chiral_restr0.077
r_bond_refined_d0.01
r_gen_planes_other0.008
r_gen_planes_refined0.007
r_bond_other_d0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2385
Nucleic Acid Atoms
Solvent Atoms30
Heterogen Atoms86

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
PHASERphasing