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Selective formation of trinuclear transition metal centers in a trimeric helical peptide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 293 0.09 M TRIS pH 8.5, 0.18 M LiSO4, 36% v/v PEG400, 5% v/v Jeffamine M-600
Crystal Properties Matthews coefficient Solvent content 2.05 39.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 30.517 α = 90 b = 30.517 β = 90 c = 106.035 γ = 120
Symmetry Space Group P 63 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2017-02-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID30B 1.34765 ESRF ID30B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.35 23.64 99.9 0.011 1 27.2 29.6 1493
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.35 2.54 100 0.424 0.916 1.9 31
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.35 23.64 1338 139 99.8 0.26739 0.26586 0.265 0.28441 0.3314 RANDOM 119.165
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.83 1.92 3.83 -12.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 45.625 r_dihedral_angle_3_deg 22.196 r_scangle_other 15.372 r_mcangle_it 13.774 r_mcangle_other 13.755 r_scbond_it 10.167 r_mcbond_it 10.153 r_mcbond_other 10.141 r_scbond_other 10.122 r_dihedral_angle_1_deg 5.781
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 45.625 r_dihedral_angle_3_deg 22.196 r_scangle_other 15.372 r_mcangle_it 13.774 r_mcangle_other 13.755 r_scbond_it 10.167 r_mcbond_it 10.153 r_mcbond_other 10.141 r_scbond_other 10.122 r_dihedral_angle_1_deg 5.781 r_angle_refined_deg 1.48 r_angle_other_deg 1.42 r_chiral_restr 0.057 r_bond_refined_d 0.011 r_gen_planes_other 0.011 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 229 Nucleic Acid Atoms Solvent Atoms 3 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling Arcimboldo phasing CRANK2 phasing