X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 6I10 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP529218-22% PEG 8000, 100-130 mM MgAc2, 100 mM citric acid pH 5.0
Crystal Properties
Matthews coefficientSolvent content
2.3647.82

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 59.66α = 90
b = 87.81β = 90
c = 98.28γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 6M2016-01-23MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I030.97625DiamondI03

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.4949.3599.90.0450.0540.021186.48486319.368
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.491.5399.91.0141.1950.4641.76.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT6I101.4949.3580613417299.840.17350.17240.1953RANDOM26.229
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.520.97-1.49
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.301
r_dihedral_angle_4_deg15.176
r_dihedral_angle_3_deg11.243
r_dihedral_angle_1_deg5.223
r_angle_refined_deg1.733
r_angle_other_deg1.627
r_mcangle_it1.429
r_mcbond_it0.921
r_mcbond_other0.912
r_chiral_restr0.108
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.301
r_dihedral_angle_4_deg15.176
r_dihedral_angle_3_deg11.243
r_dihedral_angle_1_deg5.223
r_angle_refined_deg1.733
r_angle_other_deg1.627
r_mcangle_it1.429
r_mcbond_it0.921
r_mcbond_other0.912
r_chiral_restr0.108
r_bond_refined_d0.016
r_gen_planes_other0.013
r_gen_planes_refined0.01
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3784
Nucleic Acid Atoms
Solvent Atoms349
Heterogen Atoms58

Software

Software
Software NamePurpose
REFMACrefinement
xia2data scaling
PDB_EXTRACTdata extraction
xia2data reduction