☰ Navigation Tabs
CRYSTAL STRUCTURE OF FASCIN IN COMPLEX WITH COMPOUND 1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3P53
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 292 16-20% PEG 3350, 200 mM LiAc, 4% glycerol
Crystal Properties Matthews coefficient Solvent content 2.25 45.23
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 159.91 α = 90 b = 71.62 β = 130.9 c = 113.32 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2012-07-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 1.0781 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.77 36.72 99.5 0.045 0.065 0.034 16 3.7 93872 23.131
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.77 1.82 99.9 0.535 0.709 0.365 2.3 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3P53 1.77 36.72 89166 4705 99.45 0.1965 0.1949 0.2006 0.2268 0.2303 RANDOM 39.067
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.1 1.74 -5.02 0.85
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.374 r_dihedral_angle_4_deg 17.093 r_dihedral_angle_3_deg 13.709 r_dihedral_angle_1_deg 5.111 r_angle_refined_deg 1.613 r_angle_other_deg 1.601 r_mcangle_it 1.086 r_mcbond_it 0.665 r_mcbond_other 0.665 r_chiral_restr 0.099
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.374 r_dihedral_angle_4_deg 17.093 r_dihedral_angle_3_deg 13.709 r_dihedral_angle_1_deg 5.111 r_angle_refined_deg 1.613 r_angle_other_deg 1.601 r_mcangle_it 1.086 r_mcbond_it 0.665 r_mcbond_other 0.665 r_chiral_restr 0.099 r_bond_refined_d 0.014 r_gen_planes_other 0.011 r_gen_planes_refined 0.009 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7555 Nucleic Acid Atoms Solvent Atoms 587 Heterogen Atoms 26
Software Software Software Name Purpose REFMAC refinement xia2 data scaling PDB_EXTRACT data extraction xia2 data reduction