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Structure of partially reduced RsrR in space group P2(1)2(1)2(1)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6HSD
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6 298 NaCl, MPD, MES, dithionite, anaerobic
Crystal Properties Matthews coefficient Solvent content 2.65 53.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.65 α = 90 b = 129.84 β = 90 c = 170.3 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 X 2M 2017-12-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.97242 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 48.66 99.8 0.104 0.112 0.041 0.999 13.6 7.2 100292
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 99.6 1.909 2.066 0.782 0.459 6.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6HSD 2 48.66 95165 5015 99.67 0.1967 0.1949 0.203 0.2304 0.2357 RANDOM 49.129
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.83 0.95 -1.79
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.247 r_dihedral_angle_4_deg 16.218 r_dihedral_angle_3_deg 14.411 r_dihedral_angle_1_deg 5.118 r_angle_other_deg 1.77 r_angle_refined_deg 1.724 r_chiral_restr 0.103 r_bond_other_d 0.02 r_bond_refined_d 0.011 r_gen_planes_refined 0.005
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.247 r_dihedral_angle_4_deg 16.218 r_dihedral_angle_3_deg 14.411 r_dihedral_angle_1_deg 5.118 r_angle_other_deg 1.77 r_angle_refined_deg 1.724 r_chiral_restr 0.103 r_bond_other_d 0.02 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_gen_planes_other 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9245 Nucleic Acid Atoms Solvent Atoms 586 Heterogen Atoms 308
Software Software Software Name Purpose XDS data reduction Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction PHASER phasing