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Crystal structure of M. tuberculosis FadB2 (Rv0468)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4KUE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 0.2 M ammonium citrate dibasic, 20 % w/v polyethyleneglycol 3350
Crystal Properties Matthews coefficient Solvent content 2.82 56.41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.22 α = 90 b = 90.22 β = 90 c = 284.67 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2016-09-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.92819 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.11 90.2 100 0.099 0.998 13.8 6.8 129955
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.11 2.16 100 1.04 0.583 5.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4KUE 2.11 90.2 123371 6484 100 0.19172 0.19018 0.1985 0.22135 0.2263 RANDOM 40.313
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.4 0.4 -0.8
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.124 r_dihedral_angle_4_deg 18.041 r_dihedral_angle_3_deg 16.127 r_dihedral_angle_1_deg 6.317 r_long_range_B_refined 4.635 r_long_range_B_other 4.605 r_scangle_other 2.694 r_mcangle_it 2.117 r_mcangle_other 2.117 r_scbond_it 1.658
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.124 r_dihedral_angle_4_deg 18.041 r_dihedral_angle_3_deg 16.127 r_dihedral_angle_1_deg 6.317 r_long_range_B_refined 4.635 r_long_range_B_other 4.605 r_scangle_other 2.694 r_mcangle_it 2.117 r_mcangle_other 2.117 r_scbond_it 1.658 r_scbond_other 1.655 r_angle_refined_deg 1.626 r_mcbond_it 1.284 r_mcbond_other 1.283 r_angle_other_deg 0.914 r_chiral_restr 0.079 r_bond_refined_d 0.013 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12675 Nucleic Acid Atoms Solvent Atoms 424 Heterogen Atoms 18
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing