☰ Navigation Tabs
Crystal structure of ENL (MLLT1) in complex with compound 19
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5J9S
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 293.15 25% medium molecular weight PEG smears, 0.1M citrate, pH 5.5
Crystal Properties Matthews coefficient Solvent content 2.19 43.91
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.35 α = 90 b = 48.35 β = 90 c = 137.415 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2018-07-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0000 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 45.8 100 0.057 0.029 0.996 15.3 5.6 7846 35.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.38 100 0.169 0.083 0.982 5.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5j9s 2.3 45.61 7398 390 99.85 0.21372 0.21137 0.2208 0.26086 0.2588 RANDOM 38.457
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.42 -1.42 2.83
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 23.664 r_dihedral_angle_4_deg 18.291 r_dihedral_angle_3_deg 13.636 r_dihedral_angle_1_deg 8.465 r_long_range_B_other 5.641 r_long_range_B_refined 5.638 r_scangle_other 3.292 r_mcangle_it 2.665 r_mcangle_other 2.663 r_scbond_it 2.046
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 23.664 r_dihedral_angle_4_deg 18.291 r_dihedral_angle_3_deg 13.636 r_dihedral_angle_1_deg 8.465 r_long_range_B_other 5.641 r_long_range_B_refined 5.638 r_scangle_other 3.292 r_mcangle_it 2.665 r_mcangle_other 2.663 r_scbond_it 2.046 r_scbond_other 2.044 r_mcbond_it 1.633 r_mcbond_other 1.618 r_angle_refined_deg 1.261 r_angle_other_deg 1.112 r_chiral_restr 0.059 r_bond_refined_d 0.013 r_gen_planes_refined 0.011 r_gen_planes_other 0.003 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1178 Nucleic Acid Atoms Solvent Atoms 29 Heterogen Atoms 43
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing