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TRANSCRIPTIONAL REPRESSOR ETHR FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH BDM44852
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1U9N
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6.7 293 1.4-1.6 ammonium sulfate, 15% glycerol, 100 mM MES
Crystal Properties Matthews coefficient Solvent content 2.42 49.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 121.849 α = 90 b = 121.849 β = 90 c = 33.766 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2010-12-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.00 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 43.08 99.8 0.072 27.5 9.9 24280
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.9 98.5 0.681 4 9.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1U9N 1.8 43.08 23022 1212 99.77 0.18082 0.17932 0.191 0.20919 0.2207 RANDOM 23.293
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.01 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.034 r_dihedral_angle_4_deg 16.625 r_dihedral_angle_3_deg 11.769 r_long_range_B_refined 6.337 r_long_range_B_other 6.325 r_dihedral_angle_1_deg 5.418 r_scangle_other 5.28 r_scbond_it 3.509 r_scbond_other 3.507 r_mcangle_it 3.384
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.034 r_dihedral_angle_4_deg 16.625 r_dihedral_angle_3_deg 11.769 r_long_range_B_refined 6.337 r_long_range_B_other 6.325 r_dihedral_angle_1_deg 5.418 r_scangle_other 5.28 r_scbond_it 3.509 r_scbond_other 3.507 r_mcangle_it 3.384 r_mcangle_other 3.383 r_mcbond_it 2.405 r_mcbond_other 2.399 r_angle_refined_deg 1.969 r_angle_other_deg 1.594 r_chiral_restr 0.094 r_bond_refined_d 0.013 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1490 Nucleic Acid Atoms Solvent Atoms 44 Heterogen Atoms 31
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction MOLREP phasing