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Complex of Caprine Serum Albumin with diclofenac
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5ORI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 Jeffamine ED2001, citric buffer pH 5.0, BaCl2
Crystal Properties Matthews coefficient Solvent content 2.24 45.11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.96 α = 90 b = 66.28 β = 90 c = 212.58 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2014-09-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 0.9184 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 50 97.9 0.049 0.999 22.13 5.9 85408 28.027
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.55 1.65 91.9 0.726 0.669 2.11 4.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5ORI 1.55 50 84295 1111 97.87 0.16579 0.16481 0.1752 0.23853 0.234 RANDOM 28.027
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.68 -0.54 1.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.401 r_sphericity_free 29.732 r_dihedral_angle_4_deg 19.115 r_sphericity_bonded 15.929 r_dihedral_angle_3_deg 15.674 r_long_range_B_refined 6.576 r_long_range_B_other 6.461 r_scangle_other 6.217 r_dihedral_angle_1_deg 6.027 r_scbond_it 5.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.401 r_sphericity_free 29.732 r_dihedral_angle_4_deg 19.115 r_sphericity_bonded 15.929 r_dihedral_angle_3_deg 15.674 r_long_range_B_refined 6.576 r_long_range_B_other 6.461 r_scangle_other 6.217 r_dihedral_angle_1_deg 6.027 r_scbond_it 5.44 r_scbond_other 5.439 r_mcangle_it 5.071 r_mcangle_other 5.071 r_mcbond_it 4.169 r_mcbond_other 4.168 r_rigid_bond_restr 3.598 r_angle_refined_deg 1.981 r_angle_other_deg 1.178 r_chiral_restr 0.136 r_bond_refined_d 0.022 r_gen_planes_other 0.019 r_gen_planes_refined 0.014 r_bond_other_d 0.006 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4643 Nucleic Acid Atoms Solvent Atoms 501 Heterogen Atoms 115
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling MOLREP phasing