☰ Navigation Tabs
Crystal structure of human ATAD2 bromodomain in complex with 3-methyl-8-((8-methyl-8-azabicyclooctan-3-yl)amino)-1,7-naphthyridin-2(1H)-one
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 277 1.2-1.5M ammonium sulphate and 20-25% PEG3350.
Crystal Properties Matthews coefficient Solvent content 4.04 69.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.07 α = 90 b = 79.07 β = 90 c = 138.388 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN A200 2014-05-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E+ SUPERBRIGHT 1.54178
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 68.48 99.6 12.3 11.28 20781
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.97
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.9 68.48 19709 1066 99.55 0.19561 0.19378 0.2047 0.22956 0.2443 RANDOM 57.076
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.5 0.25 0.5 -1.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.322 r_dihedral_angle_3_deg 12.077 r_dihedral_angle_4_deg 10.136 r_long_range_B_other 9.746 r_long_range_B_refined 9.742 r_scangle_other 5.592 r_scbond_it 5.349 r_scbond_other 5.344 r_dihedral_angle_1_deg 4.136 r_mcangle_it 3.274
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.322 r_dihedral_angle_3_deg 12.077 r_dihedral_angle_4_deg 10.136 r_long_range_B_other 9.746 r_long_range_B_refined 9.742 r_scangle_other 5.592 r_scbond_it 5.349 r_scbond_other 5.344 r_dihedral_angle_1_deg 4.136 r_mcangle_it 3.274 r_mcangle_other 3.272 r_mcbond_it 2.262 r_mcbond_other 2.261 r_angle_refined_deg 0.954 r_angle_other_deg 0.736 r_chiral_restr 0.058 r_bond_refined_d 0.005 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1084 Nucleic Acid Atoms Solvent Atoms 198 Heterogen Atoms 45
Software Software Software Name Purpose REFMAC refinement d*TREK data reduction d*TREK data scaling