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Alcohol oxidase from Phanerochaete chrysosporium mutant F101S
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6H3G
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293.15 14% (w/v) PEG3350 and 0.2 M potassium acetate
Crystal Properties Matthews coefficient Solvent content 2.21 44.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 112.074 α = 90 b = 203.553 β = 104.64 c = 116.009 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M-F 2017-05-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 0.9726 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 49.2 98.5 0.979 6.3 2.9 170450
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.54 96.8 0.657 0.65 0.485 1.4 2.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6H3G 2.5 49.19 162012 8397 98.36 0.21387 0.21015 0.2137 0.2856 0.2845 RANDOM 32.869
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.17 0.87 1.78 -2.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.315 r_dihedral_angle_3_deg 19.609 r_dihedral_angle_4_deg 18.734 r_dihedral_angle_1_deg 7.809 r_long_range_B_refined 4.085 r_long_range_B_other 4.082 r_scangle_other 2.368 r_mcangle_it 2.345 r_mcangle_other 2.345 r_mcbond_it 1.438
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.315 r_dihedral_angle_3_deg 19.609 r_dihedral_angle_4_deg 18.734 r_dihedral_angle_1_deg 7.809 r_long_range_B_refined 4.085 r_long_range_B_other 4.082 r_scangle_other 2.368 r_mcangle_it 2.345 r_mcangle_other 2.345 r_mcbond_it 1.438 r_mcbond_other 1.437 r_scbond_it 1.423 r_scbond_other 1.423 r_angle_refined_deg 1.22 r_angle_other_deg 0.796 r_chiral_restr 0.056 r_bond_refined_d 0.006 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 40647 Nucleic Acid Atoms Solvent Atoms 695 Heterogen Atoms 436
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling MOLREP phasing